OBO Foundry dashboard analysis¶

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/tmp/ipykernel_25992/4293058459.py:21: FutureWarning:

The `inplace` parameter in pandas.Categorical.reorder_categories is deprecated and will be removed in a future version. Reordering categories will always return a new Categorical object.

Ontologies by number of axioms

Ontologies by number of classes

Ontologies by how many ontologies use it

Different serialisations used

RDF/XML Syntax    175
OWL/XML Syntax      3
RDF/XML             3
unknown             1
Name: syntax, dtype: int64

Breakdown of used Axiom Types

count mean std min 25% 50% 75% max
AnnotationAssertion 181 150294.500000 801196.664373 0.0 1426.75 7025.0 28479.75 9810543.0
Declaration 181 28577.901099 186574.824807 0.0 425.00 1162.0 4759.00 2401853.0
SubClassOf 176 38143.835165 212926.950523 0.0 333.00 1239.5 6542.25 2401824.0
EquivalentClasses 125 2652.456044 13621.110551 0.0 0.00 25.0 205.00 126427.0
SubAnnotationPropertyOf 114 8.093407 17.095024 0.0 0.00 2.0 7.00 120.0
TransitiveObjectProperty 113 6.109890 11.002712 0.0 0.00 2.0 6.00 69.0
SubObjectPropertyOf 102 40.478022 95.617141 0.0 0.00 2.0 36.25 674.0
DisjointClasses 93 27.225275 87.294692 0.0 0.00 1.0 21.00 639.0
ObjectPropertyRange 84 14.324176 27.046703 0.0 0.00 0.0 18.75 142.0
ObjectPropertyDomain 84 14.521978 27.762749 0.0 0.00 0.0 18.00 148.0
InverseObjectProperties 80 9.087912 17.893885 0.0 0.00 0.0 12.00 113.0
SubPropertyChainOf 65 9.329670 25.380662 0.0 0.00 0.0 2.00 149.0
ClassAssertion 62 80.109890 476.022852 0.0 0.00 0.0 18.00 5528.0
FunctionalObjectProperty 47 0.807692 1.701915 0.0 0.00 0.0 1.00 9.0
SymmetricObjectProperty 45 1.598901 8.430974 0.0 0.00 0.0 0.00 80.0
DataPropertyRange 42 1.087912 3.143522 0.0 0.00 0.0 0.00 30.0
DataPropertyDomain 37 1.016484 3.149104 0.0 0.00 0.0 0.00 32.0
IrrefexiveObjectProperty 36 0.598901 2.319411 0.0 0.00 0.0 0.00 26.0
DifferentIndividuals 34 0.675824 4.199364 0.0 0.00 0.0 0.00 56.0
AnnotationPropertyRangeOf 33 1.401099 10.187122 0.0 0.00 0.0 0.00 133.0
SubDataPropertyOf 28 0.829670 3.595362 0.0 0.00 0.0 0.00 33.0
EquivalentObjectProperties 27 1.368132 5.374554 0.0 0.00 0.0 0.00 36.0
FunctionalDataProperty 23 0.472527 1.522143 0.0 0.00 0.0 0.00 11.0
InverseFunctionalObjectProperty 20 0.164835 0.551517 0.0 0.00 0.0 0.00 4.0
AsymmetricObjectProperty 20 0.505495 2.520079 0.0 0.00 0.0 0.00 26.0
Rule 19 1.571429 5.501668 0.0 0.00 0.0 0.00 29.0
DisjointObjectProperties 17 0.236264 1.129320 0.0 0.00 0.0 0.00 10.0
ObjectPropertyAssertion 14 12.593407 102.235615 0.0 0.00 0.0 0.00 1024.0
ReflexiveObjectProperty 11 0.109890 0.503042 0.0 0.00 0.0 0.00 4.0
AnnotationPropertyDomain 9 0.263736 1.623959 0.0 0.00 0.0 0.00 17.0
DisjointUnion 7 0.087912 0.559170 0.0 0.00 0.0 0.00 5.0
DataPropertyAssertion 5 0.181319 1.609736 0.0 0.00 0.0 0.00 20.0
DatatypeDefinition 2 0.109890 1.409914 0.0 0.00 0.0 0.00 19.0
SameIndividual 1 0.005495 0.074125 0.0 0.00 0.0 0.00 1.0

Breakdown of used OWL Class Expression constructs

count mean std min 25% 50% 75% max
Class 180 116991.148352 626867.105947 0.0 1358.75 5096.5 20043.75 7205474.0
ObjectSomeValuesFrom 161 17105.758242 87416.275568 0.0 33.00 452.0 2856.75 853209.0
ObjectIntersectionOf 121 4134.565934 20277.633802 0.0 0.00 31.0 382.50 202009.0
ObjectUnionOf 86 27.164835 89.366681 0.0 0.00 0.0 15.75 767.0
ObjectAllValuesFrom 72 28.587912 147.933166 0.0 0.00 0.0 9.75 1764.0
ObjectComplementOf 64 12.505495 81.756460 0.0 0.00 0.0 2.00 1060.0
ObjectMinCardinality 60 2.192308 7.356085 0.0 0.00 0.0 1.00 57.0
ObjectExactCardinality 47 9.285714 88.773943 0.0 0.00 0.0 1.00 1193.0
ObjectOneOf 43 3.686813 28.344677 0.0 0.00 0.0 0.00 273.0
DataMinCardinality 25 0.236264 0.676523 0.0 0.00 0.0 0.00 4.0
DataSomeValuesFrom 22 6.994505 64.631424 0.0 0.00 0.0 0.00 859.0
DataExactCardinality 22 0.532967 1.634068 0.0 0.00 0.0 0.00 7.0
ObjectHasValue 20 144.153846 1586.411503 0.0 0.00 0.0 0.00 21288.0
ObjectMaxCardinality 19 0.846154 4.759226 0.0 0.00 0.0 0.00 45.0
DataHasValue 17 120.851648 1577.827290 0.0 0.00 0.0 0.00 21288.0
ObjectHasSelf 15 0.225275 0.962742 0.0 0.00 0.0 0.00 6.0
DataAllValuesFrom 3 0.104396 1.032661 0.0 0.00 0.0 0.00 13.0
DataMaxCardinality 2 0.010989 0.104539 0.0 0.00 0.0 0.00 1.0

OBO Score (Experimental)

ontology score score_dash score_impact
120 omo 0.956 0.956 0.956
7 bfo 0.804 0.822 0.786
149 ro 0.790 0.844 0.736
132 pato 0.706 0.956 0.456
63 go 0.700 0.904 0.495
110 obi 0.680 0.949 0.412
19 cl 0.617 0.949 0.286
165 uberon 0.584 0.800 0.368
102 ncbitaxon 0.545 0.711 0.379
144 pr 0.542 0.853 0.231
34 doid 0.537 0.949 0.126
13 chebi 0.527 0.631 0.423
43 envo 0.526 0.876 0.176
94 mondo 0.496 0.949 0.044
68 hp 0.496 0.867 0.126
173 wbphenotype 0.494 0.978 0.011
172 wbls 0.494 0.978 0.011
139 plana 0.491 0.978 0.005
113 ogms 0.484 0.733 0.236
39 eco 0.477 0.949 0.005
35 dpo 0.474 0.949 0.000
162 trans 0.474 0.920 0.027
128 opl 0.472 0.927 0.016
96 mp 0.467 0.889 0.044
111 obib 0.466 0.904 0.027
62 gno 0.466 0.927 0.005
122 omrse 0.465 0.838 0.093
41 ecto 0.464 0.911 0.016
159 symp 0.463 0.882 0.044
108 oba 0.456 0.889 0.022
45 eupath 0.453 0.889 0.016
134 pco 0.449 0.793 0.104
51 fbdv 0.449 0.882 0.016
138 phipo 0.447 0.882 0.011
79 lepao 0.445 0.889 0.000
25 colao 0.445 0.889 0.000
133 pcl 0.445 0.889 0.000
10 caro 0.444 0.667 0.220
179 zfa 0.442 0.867 0.016
49 fbbt 0.442 0.867 0.016
99 mro 0.441 0.882 0.000
170 vto 0.441 0.882 0.000
50 fbcv 0.441 0.860 0.022
72 iao 0.438 0.876 0.000
31 ddpheno 0.436 0.867 0.005
171 wbbt 0.435 0.860 0.011
16 chmo 0.432 0.816 0.049
125 ontoavida 0.430 0.860 0.000
1 aism 0.427 0.838 0.016
40 ecocore 0.427 0.844 0.011
181 zp 0.427 0.844 0.011
36 dron 0.426 0.771 0.082
24 cob 0.422 0.822 0.022
151 rxno 0.421 0.838 0.005
148 rbo 0.421 0.838 0.005
95 mop 0.419 0.816 0.022
65 hancestro 0.416 0.816 0.016
140 planp 0.413 0.822 0.005
57 fypo 0.411 0.822 0.000
178 zeco 0.411 0.822 0.000
8 bspo 0.410 0.727 0.093
58 gecko 0.408 0.816 0.000
141 po 0.401 0.704 0.099
12 cdno 0.400 0.800 0.000
6 bco 0.399 0.793 0.005
177 xpo 0.399 0.793 0.005
117 ohpi 0.394 0.787 0.000
74 ico 0.391 0.749 0.033
37 duo 0.390 0.764 0.016
161 to 0.388 0.771 0.005
145 psdo 0.382 0.764 0.000
101 nbo 0.379 0.653 0.104
55 foodon 0.371 0.660 0.082
69 hsapdv 0.369 0.711 0.027
116 ohmi 0.369 0.733 0.005
75 ido 0.368 0.616 0.121
56 fovt 0.366 0.733 0.000
130 ornaseq 0.366 0.733 0.000
46 exo 0.363 0.704 0.022
20 clao 0.363 0.727 0.000
44 epio 0.363 0.727 0.000
174 xao 0.360 0.704 0.016
38 ecao 0.355 0.711 0.000
136 pdumdv 0.355 0.711 0.000
127 oostt 0.354 0.698 0.011
103 ncit 0.354 0.593 0.115
157 stato 0.349 0.622 0.077
175 xco 0.347 0.682 0.011
33 disdriv 0.344 0.689 0.000
26 cro 0.344 0.689 0.000
118 olatdv 0.344 0.689 0.000
92 mmusdv 0.344 0.689 0.000
135 pdro 0.341 0.660 0.022
4 apollo_sv 0.340 0.587 0.093
167 upheno 0.336 0.638 0.033
59 genepio 0.336 0.638 0.033
11 cdao 0.336 0.667 0.005
60 geno 0.336 0.660 0.011
15 chiro 0.334 0.667 0.000
3 apo 0.334 0.667 0.000
18 cio 0.334 0.667 0.000
67 hom 0.334 0.667 0.000
77 kisao 0.334 0.667 0.000
158 swo 0.333 0.660 0.005
0 agro 0.333 0.660 0.005
2 amphx 0.330 0.660 0.000
47 fao 0.330 0.644 0.016
78 labo 0.330 0.660 0.000
160 taxrank 0.328 0.644 0.011
143 ppo 0.327 0.653 0.000
153 scdo 0.327 0.653 0.000
98 mpio 0.325 0.644 0.005
32 dideo 0.325 0.638 0.011
166 uo 0.324 0.489 0.159
27 cteno 0.322 0.644 0.000
80 ma 0.322 0.644 0.000
70 hso 0.319 0.638 0.000
176 xlmod 0.319 0.638 0.000
42 emapa 0.319 0.638 0.000
30 ddanat 0.317 0.622 0.011
48 fbbi 0.316 0.631 0.000
155 so 0.316 0.467 0.165
91 mmo 0.314 0.616 0.011
180 zfs 0.314 0.622 0.005
29 cvdo 0.314 0.616 0.011
129 opmi 0.313 0.593 0.033
9 bto 0.310 0.593 0.027
89 miapa 0.308 0.616 0.000
54 fobi 0.308 0.616 0.000
109 obcs 0.307 0.593 0.022
61 geo 0.307 0.571 0.044
84 mf 0.305 0.578 0.033
82 maxo 0.304 0.593 0.016
14 cheminf 0.300 0.600 0.000
152 sbo 0.300 0.600 0.000
107 oarcs 0.300 0.600 0.000
97 mpath 0.297 0.556 0.038
112 ogg 0.297 0.549 0.044
106 oae 0.296 0.504 0.088
66 hao 0.296 0.593 0.000
142 poro 0.296 0.593 0.000
81 mamo 0.289 0.578 0.000
83 mco 0.289 0.578 0.000
22 clyh 0.289 0.578 0.000
53 flopo 0.288 0.571 0.005
147 pw 0.287 0.564 0.011
28 cto 0.285 0.571 0.000
164 txpo 0.285 0.571 0.000
150 rs 0.284 0.564 0.005
119 omit 0.282 0.542 0.022
115 ohd 0.282 0.564 0.000
137 peco 0.280 0.527 0.033
146 pso 0.278 0.556 0.000
86 mfoem 0.277 0.549 0.005
64 gsso 0.272 0.527 0.016
23 cmo 0.269 0.489 0.049
169 vt 0.264 0.511 0.016
88 mi 0.264 0.511 0.016
87 mfomd 0.264 0.511 0.016
126 ontoneo 0.260 0.520 0.000
104 ncro 0.258 0.504 0.011
52 fideo 0.256 0.511 0.000
163 tto 0.256 0.511 0.000
124 ons 0.253 0.489 0.016
105 nomen 0.252 0.504 0.000
5 aro 0.245 0.467 0.022
121 omp 0.245 0.467 0.022
17 cido 0.239 0.467 0.011
76 ino 0.238 0.460 0.016
154 sepio 0.236 0.467 0.005
168 vo 0.235 0.393 0.077
85 mfmo 0.234 0.467 0.000
21 clo 0.233 0.400 0.066
73 iceo 0.230 0.460 0.000
71 htn 0.230 0.460 0.000
123 one 0.230 0.460 0.000
131 ovae 0.230 0.460 0.000
93 mod 0.225 0.438 0.011
156 spd 0.219 0.438 0.000
114 ogsf 0.197 0.393 0.000
90 micro 0.192 0.378 0.005
100 ms 0.000 0.000 0.000

OBO Score Summary

count mean std min 25% 50% 75% max
score 182.0 0.370121 0.115773 0.0 0.29775 0.344 0.43425 0.956
score_dash 182.0 0.687967 0.160745 0.0 0.57800 0.667 0.82200 0.978
score_impact 182.0 0.052214 0.132394 0.0 0.00000 0.011 0.03150 0.956

OBO dependency graph